I'm no expert and I don't know if my experience with my '09 relates to your '06 but here goes.
First, check the fuse. I was having an issue with the glove box not opening and the key remote not locking/unlocking. The fuse in the back of the car was blown.
Second, when I program my keys using the IIDTool the last step of holding the Unlock button and then pressing the Lock button three times is VERY time sensitive. And, the part about releasing BOTH buttons at the same time is also critical! I've blown it many times when trying to get everything working.
If that doesn't help, then I'm of no help at all .
Good luck!
Larry. 2009 Range Rover L322 Autobiography
Bournville/Ivory
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